Human SNP ID | rs228769 |
---|---|
Human chromosome | chr17 |
Human SNP position | 44115817 |
Pig chromosome | chr12 |
Pig SNP position | 19310618 |
PubMed ID | 19801982 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19801982 |
Study | Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies. |
Disease/Trait | Bone mineral density (spine) |
Initial sample | 19,195 European ancestry individuals |
Replication sample | NA |
Region | 17q21.31 |
Chromosome id | chr17 |
Chromosome position | 44115817 |
Reported gene | HDAC5 |
Mapped gene | LOC105371789, HDAC5 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105371789, 10014 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs228769-G |
SNPs | rs228769 |
Merged | 0 |
SNP id current | 228769 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.2 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 0.07 |
%95 Ci | [0.04-0.10] s.d. increase |
Platform | Affymetrix, Illumina [2543686] (imputed) |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST000494 |
PubMed ID | 19801982 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19801982 |
Study | Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies. |
Disease/Trait | Bone mineral density (hip) |
Initial sample | 19,195 European ancestry individuals |
Replication sample | NA |
Region | 17q21.31 |
Chromosome id | chr17 |
Chromosome position | 44115817 |
Reported gene | HDAC5 |
Mapped gene | LOC105371789, HDAC5 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105371789, 10014 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs228769-G |
SNPs | rs228769 |
Merged | 0 |
SNP id current | 228769 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.2 |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | |
Or beta | 0.08 |
%95 Ci | [0.05-0.11] s.d. increase |
Platform | Affymetrix, Illumina [2543686] (imputed) |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST000495 |