Human SNP ID | rs2286276 |
---|---|
Human chromosome | chr7 |
Human SNP position | 73573024 |
Pig chromosome | chr3 |
Pig SNP position | 10588641 |
PubMed ID | 21909109 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21909109 |
Study | Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits. |
Disease/Trait | Triglycerides |
Initial sample | 12,545 Korean ancestry individuals |
Replication sample | Up to 30,395 East Asian ancestry individuals |
Region | 7q11.23 |
Chromosome id | chr7 |
Chromosome position | 73573024 |
Reported gene | TBL2, MLXIPL |
Mapped gene | TBL2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 26608 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2286276-T |
SNPs | rs2286276 |
Merged | 0 |
SNP id current | 2286276 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.1 |
P value | 0.000000000000001 |
Pvalue mlog | 15 |
P value text | |
Or beta | 0.0652 |
%95 Ci | [0.049-0.081] mg/dL decrease |
Platform | Affymetrix [~ 2200000] (imputed) |
CNV | N |
Mapped trait | triglyceride measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004530 |
Study accession | GCST001230 |
PubMed ID | 23505323 |
Journal | J Med Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23505323 |
Study | Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci. |
Disease/Trait | Hypertriglyceridemia |
Initial sample | 1,122 Mexican ancestry cases, 1,118 Mexican ancestry controls |
Replication sample | 1,067 Mexican ancestry cases, 1,054 Mexican ancestry controls |
Region | 7q11.23 |
Chromosome id | chr7 |
Chromosome position | 73573024 |
Reported gene | TBL2, VPS37D, MLXIPL, BAZ1B, BCL7B |
Mapped gene | TBL2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 26608 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2286276-? |
SNPs | rs2286276 |
Merged | 0 |
SNP id current | 2286276 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.88 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.39 |
%95 Ci | [1.25-1.53] |
Platform | Illumina [1361436] (imputed) |
CNV | N |
Mapped trait | triglyceride measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004530 |
Study accession | GCST001905 |