Human SNP ID | rs2284932 |
---|---|
Human chromosome | chr2 |
Human SNP position | 207147785 |
Pig chromosome | chr15 |
Pig SNP position | 121919901 |
PubMed ID | 25985088 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/25985088 |
Study | Investigation of susceptibility genes triggering lachrymal/salivary gland lesion complications in Japanese patients with type 1 autoimmune pancreatitis. |
Disease/Trait | Lachrymal/Salivary gland lesion in type 1 autoimmune pancreatitis |
Initial sample | 50 Japanese ancestry cases with lesions, 53 Japanese ancestry cases without lesions |
Replication sample | NA |
Region | 2q33.3 |
Chromosome id | chr2 |
Chromosome position | 207147785 |
Reported gene | KLF7 |
Mapped gene | KLF7 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 8609 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2284932-C |
SNPs | rs2284932 |
Merged | |
SNP id current | 2284932 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 4.35 |
%95 Ci | [2.32-8.16] |
Platform | Affymetrix [12033] |
CNV | N |
Mapped trait | salivary gland lesion, autoimmune pancreatitis type 1, lachrymal gland lesion |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007124, http://www.ebi.ac.uk/efo/EFO_1000780, http://www.ebi.ac.uk/efo/EFO_0007125 |
Study accession | GCST002913 |