SNP Detail For rs2284932
1.Mapping Information
Human SNP ID rs2284932
Human chromosome chr2
Human SNP position 207147785
Pig chromosome chr15
Pig SNP position 121919901
2.Annotation Information
PubMed ID25985088
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/25985088
StudyInvestigation of susceptibility genes triggering lachrymal/salivary gland lesion complications in Japanese patients with type 1 autoimmune pancreatitis.
Disease/TraitLachrymal/Salivary gland lesion in type 1 autoimmune pancreatitis
Initial sample50 Japanese ancestry cases with lesions, 53 Japanese ancestry cases without lesions
Replication sampleNA
Region2q33.3
Chromosome idchr2
Chromosome position207147785
Reported geneKLF7
Mapped geneKLF7
Upstream gene id
Downstream gene id
SNP gene ids8609
Upstream gene distance
Downstream gene distance
SNP risk allelers2284932-C
SNPsrs2284932
Merged
SNP id current2284932
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta4.35
%95 Ci[2.32-8.16]
PlatformAffymetrix [12033]
CNVN
Mapped traitsalivary gland lesion, autoimmune pancreatitis type 1, lachrymal gland lesion
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007124, http://www.ebi.ac.uk/efo/EFO_1000780, http://www.ebi.ac.uk/efo/EFO_0007125
Study accessionGCST002913