SNP Detail For rs228437
1.Mapping Information
Human SNP ID rs228437
Human chromosome chr6
Human SNP position 134577318
Pig chromosome chr1
Pig SNP position 32829504
2.Annotation Information
PubMed ID21983787
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21983787
StudyGenome-wide association study identifies three new melanoma susceptibility loci.
Disease/TraitMelanoma
Initial sample2,804 European ancestry cases, 7,618 European ancestry controls
Replication sample5,551 European ancestry cases, 7,449 European ancestry controls
Region6q23.2
Chromosome idchr6
Chromosome position134577318
Reported geneASIP
Mapped geneLOC101928304 - LOC101928277
Upstream gene id101928304
Downstream gene id101928277
SNP gene ids
Upstream gene distance37313
Downstream gene distance96600
SNP risk allelers2284378-G
SNPsrs228437
Merged0
SNP id current228437
Contextintron_variant
Intergenic1
Allele frequency0.33
P value0.0000001
Pvalue mlog7
P value text
Or beta1.21
%95 Ci[1.13-1.29]
PlatformIllumina [594997]
CNVN
Mapped traitmelanoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000756
Study accessionGCST001267