Human SNP ID | rs228437 |
---|---|
Human chromosome | chr6 |
Human SNP position | 134577318 |
Pig chromosome | chr1 |
Pig SNP position | 32829504 |
PubMed ID | 21983787 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21983787 |
Study | Genome-wide association study identifies three new melanoma susceptibility loci. |
Disease/Trait | Melanoma |
Initial sample | 2,804 European ancestry cases, 7,618 European ancestry controls |
Replication sample | 5,551 European ancestry cases, 7,449 European ancestry controls |
Region | 6q23.2 |
Chromosome id | chr6 |
Chromosome position | 134577318 |
Reported gene | ASIP |
Mapped gene | LOC101928304 - LOC101928277 |
Upstream gene id | 101928304 |
Downstream gene id | 101928277 |
SNP gene ids | |
Upstream gene distance | 37313 |
Downstream gene distance | 96600 |
SNP risk allele | rs2284378-G |
SNPs | rs228437 |
Merged | 0 |
SNP id current | 228437 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.33 |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | |
Or beta | 1.21 |
%95 Ci | [1.13-1.29] |
Platform | Illumina [594997] |
CNV | N |
Mapped trait | melanoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000756 |
Study accession | GCST001267 |