SNP Detail For rs2282930
1.Mapping Information
Human SNP ID rs2282930
Human chromosome chr7
Human SNP position 50686982
Pig chromosome chr9
Pig SNP position 150343995
2.Annotation Information
PubMed ID22504420
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22504420
StudyGenome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.
Disease/TraitBone mineral density
Initial sampleUp to 32,961 European and East Asian ancestry individuals
Replication sampleUp to 50,933 European and East Asian ancestry individuals
Region7p12.1
Chromosome idchr7
Chromosome position50686982
Reported geneGRB10
Mapped geneGRB10
Upstream gene id
Downstream gene id
SNP gene ids2887
Upstream gene distance
Downstream gene distance
SNP risk allelers2282930-A
SNPsrs2282930
Merged0
SNP id current2282930
Contextintron_variant
Intergenic0
Allele frequency0.24
P value0.000003
Pvalue mlog5.52287874528033
P value text(FNBMD)
Or beta0.03
%95 Ci[NR] unit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitbone density
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003923
Study accessionGCST001482