SNP Detail For rs2280630
1.Mapping Information
Human SNP ID rs2280630
Human chromosome chr3
Human SNP position 39154473
Pig chromosome chr13
Pig SNP position 26106334
2.Annotation Information
PubMed ID25648963
JournalBiol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/25648963
StudyGenome-wide Studies of Verbal Declarative Memory in Nondemented Older People: The Cohorts for Heart and Aging Research in Genomic Epidemiology Consortium.
Disease/TraitVerbal declarative memory
Initial sampleUp to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals
Replication sampleUp to 10,617 European ancestry individuals, up to 3,811 African American individuals
Region3p22.2
Chromosome idchr3
Chromosome position39154473
Reported geneAXUD1, TTC21A
Mapped geneLOC101928263, CSRNP1
Upstream gene id
Downstream gene id
SNP gene ids101928263, 64651
Upstream gene distance
Downstream gene distance
SNP risk allelers2280630-T
SNPsrs2280630
Merged0
SNP id current2280630
Contextintron_variant
Intergenic0
Allele frequency0.32
P value0.000003
Pvalue mlog5.52287874528033
P value text(PAR-dr, EA)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitmemory performance, paragraph delayed recall measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004874, http://www.ebi.ac.uk/efo/EFO_0006806
Study accessionGCST002701
PubMed ID25648963
JournalBiol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/25648963
StudyGenome-wide Studies of Verbal Declarative Memory in Nondemented Older People: The Cohorts for Heart and Aging Research in Genomic Epidemiology Consortium.
Disease/TraitVerbal declarative memory
Initial sampleUp to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals
Replication sampleUp to 10,617 European ancestry individuals, up to 3,811 African American individuals
Region3p22.2
Chromosome idchr3
Chromosome position39154473
Reported geneAXUD1, TTC21A
Mapped geneLOC101928263, CSRNP1
Upstream gene id
Downstream gene id
SNP gene ids101928263, 64651
Upstream gene distance
Downstream gene distance
SNP risk allelers2280630-T
SNPsrs2280630
Merged0
SNP id current2280630
Contextintron_variant
Intergenic0
Allele frequency0.32
P value0.000002
Pvalue mlog5.69897000433601
P value text(PAR-dr)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitmemory performance, paragraph delayed recall measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004874, http://www.ebi.ac.uk/efo/EFO_0006806
Study accessionGCST002701