SNP Detail For rs2278702
1.Mapping Information
Human SNP ID rs2278702
Human chromosome chr15
Human SNP position 80402580
Pig chromosome chr7
Pig SNP position 54766702
2.Annotation Information
PubMed ID18711365
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18711365
StudyCollaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.
Disease/TraitBipolar disorder
Initial sample4,387 European ancestry cases, 6,209 European ancestry controls
Replication sampleNA
Region15q25.1
Chromosome idchr15
Chromosome position80402580
Reported geneNR
Mapped geneLOC101929560 - ARNT2
Upstream gene id101929560
Downstream gene id9915
SNP gene ids
Upstream gene distance40116
Downstream gene distance1770
SNP risk allelers2278702-?
SNPsrs2278702
Merged0
SNP id current2278702
Contextintron_variant
Intergenic1
Allele frequency0.83
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta1.21
%95 Ci[NR]
PlatformAffymetrix [1769948] (imputed)
CNVN
Mapped traitbipolar disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000289
Study accessionGCST000220