SNP Detail For rs2278034
1.Mapping Information
Human SNP ID rs2278034
Human chromosome chr3
Human SNP position 195870036
Pig chromosome chr13
Pig SNP position 143661778
2.Annotation Information
PubMed ID23897914
JournalPediatrics
Linkwww.ncbi.nlm.nih.gov/pubmed/23897914
StudyA genome-wide association study (GWAS) for bronchopulmonary dysplasia.
Disease/TraitBronchopulmonary dysplasia
Initial sample117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European
Replication sample371 newborn cases, 424 newborn controls
Region3q29
Chromosome idchr3
Chromosome position195870036
Reported geneTNK2
Mapped geneTNK2
Upstream gene id
Downstream gene id
SNP gene ids10188
Upstream gene distance
Downstream gene distance
SNP risk allelers2278034
SNPsrs2278034
Merged0
SNP id current2278034
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.52
P value0.000005
Pvalue mlog5.30102999566398
P value text(EA)
Or beta1.83
%95 Ci[NR]
PlatformIllumina [1795103]
CNVN
Mapped traitBronchopulmonary dysplasia
Mapped trait URIhttp://www.orpha.net/ORDO/Orphanet_70589
Study accessionGCST002104