PigVar
Overview
Pig SNPs
SNP Table
SNP Hit on Gene
SNP Coding
SNP lincRNA
Search SNPs by Region
Browse on Chromosome
SV
Positive Selection
Help
Manual
Pipeline
Data Statistics
Contact Us
Download
SNP Detail For rs2276824
1.Mapping Information
| Human SNP ID | rs2276824 |
|---|---|
| Human chromosome | chr3 |
| Human SNP position | 52603470 |
| Pig chromosome | chr13 |
| Pig SNP position | 37949694 |
2.Annotation Information
| PubMed ID | 25673412 |
|---|---|
| Journal | Nature |
| Link | www.ncbi.nlm.nih.gov/pubmed/25673412 |
| Study | New genetic loci link adipose and insulin biology to body fat distribution. |
| Disease/Trait | Waist-to-hip ratio adjusted for body mass index |
| Initial sample | up to 56,910 European ancestry men, up to 86,570 European ancestry women |
| Replication sample | up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African-American/Afro-Caribbean ancestry men, 6,258 African-American/Afro-Caribbean ancestry women, 2,285 South Asian ancestr |
| Region | 3p21.1 |
| Chromosome id | chr3 |
| Chromosome position | 52603470 |
| Reported gene | PBRM1 |
| Mapped gene | PBRM1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 55193 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs2276824-C |
| SNPs | rs2276824 |
| Merged | 0 |
| SNP id current | 2276824 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.4322 |
| P value | 0.000000004 |
| Pvalue mlog | 8.39794000867203 |
| P value text | (EA, women) |
| Or beta | 0.028 |
| %95 Ci | [0.019-0.037] unit increase |
| Platform | Affymetrix, Illumina, Perlegen [up to 2542447] (imputed) |
| CNV | N |
| Mapped trait | waist-hip ratio, body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002782 |
| PubMed ID | 25673412 |
| Journal | Nature |
| Link | www.ncbi.nlm.nih.gov/pubmed/25673412 |
| Study | New genetic loci link adipose and insulin biology to body fat distribution. |
| Disease/Trait | Waist-to-hip ratio adjusted for body mass index |
| Initial sample | up to 56,910 European ancestry men, up to 86,570 European ancestry women |
| Replication sample | up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African-American/Afro-Caribbean ancestry men, 6,258 African-American/Afro-Caribbean ancestry women, 2,285 South Asian ancestr |
| Region | 3p21.1 |
| Chromosome id | chr3 |
| Chromosome position | 52603470 |
| Reported gene | PBRM1 |
| Mapped gene | PBRM1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 55193 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs2276824-C |
| SNPs | rs2276824 |
| Merged | 0 |
| SNP id current | 2276824 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.4342 |
| P value | 0.00000000003 |
| Pvalue mlog | 10.5228787452803 |
| P value text | (EA) |
| Or beta | 0.0236 |
| %95 Ci | [0.017-0.031] unit increase |
| Platform | Affymetrix, Illumina, Perlegen [up to 2542447] (imputed) |
| CNV | N |
| Mapped trait | waist-hip ratio, body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002782 |
| PubMed ID | 25673412 |
| Journal | Nature |
| Link | www.ncbi.nlm.nih.gov/pubmed/25673412 |
| Study | New genetic loci link adipose and insulin biology to body fat distribution. |
| Disease/Trait | Waist-to-hip ratio adjusted for body mass index |
| Initial sample | up to 56,910 European ancestry men, up to 86,570 European ancestry women |
| Replication sample | up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African-American/Afro-Caribbean ancestry men, 6,258 African-American/Afro-Caribbean ancestry women, 2,285 South Asian ancestr |
| Region | 3p21.1 |
| Chromosome id | chr3 |
| Chromosome position | 52603470 |
| Reported gene | PBRM1 |
| Mapped gene | PBRM1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 55193 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs2276824-C |
| SNPs | rs2276824 |
| Merged | 0 |
| SNP id current | 2276824 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.4283 |
| P value | 0.00000001 |
| Pvalue mlog | 8 |
| P value text | (women) |
| Or beta | 0.0265 |
| %95 Ci | [0.017-0.036] unit increase |
| Platform | Affymetrix, Illumina, Perlegen [up to 2542447] (imputed) |
| CNV | N |
| Mapped trait | waist-hip ratio, body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002782 |
| PubMed ID | 25673412 |
| Journal | Nature |
| Link | www.ncbi.nlm.nih.gov/pubmed/25673412 |
| Study | New genetic loci link adipose and insulin biology to body fat distribution. |
| Disease/Trait | Waist-to-hip ratio adjusted for body mass index |
| Initial sample | up to 56,910 European ancestry men, up to 86,570 European ancestry women |
| Replication sample | up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African-American/Afro-Caribbean ancestry men, 6,258 African-American/Afro-Caribbean ancestry women, 2,285 South Asian ancestr |
| Region | 3p21.1 |
| Chromosome id | chr3 |
| Chromosome position | 52603470 |
| Reported gene | PBRM1 |
| Mapped gene | PBRM1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 55193 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs2276824-C |
| SNPs | rs2276824 |
| Merged | 0 |
| SNP id current | 2276824 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.4332 |
| P value | 0.00000000007 |
| Pvalue mlog | 10.1549019599857 |
| P value text | |
| Or beta | 0.0224 |
| %95 Ci | [0.016-0.029] unit increase |
| Platform | Affymetrix, Illumina, Perlegen [up to 2542447] (imputed) |
| CNV | N |
| Mapped trait | waist-hip ratio, body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002782 |
|
Kunming Institute of Zoology, CAS
and Xi'an University of Technology ©2014-2017 All Rights Reserved.
|
|