SNP Detail For rs2274351
1.Mapping Information
Human SNP ID rs2274351
Human chromosome chr10
Human SNP position 102504350
Pig chromosome chr14
Pig SNP position 123356418
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitInflammatory bowel disease
Initial sample12,882 European ancestry cases, 21,770 European ancestry controls
Replication sample25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region10q24.32
Chromosome idchr10
Chromosome position102504350
Reported geneNR
Mapped geneSUFU
Upstream gene id
Downstream gene id
SNP gene ids51684
Upstream gene distance
Downstream gene distance
SNP risk allelers2274351-?
SNPsrs2274351
Merged
SNP id current2274351
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000000007
Pvalue mlog8.15490195998574
P value text(EA)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitinflammatory bowel disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST003043