Human SNP ID | rs2274316 |
---|---|
Human chromosome | chr1 |
Human SNP position | 156476450 |
Pig chromosome | chr4 |
Pig SNP position | 102224867 |
PubMed ID | 23793025 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23793025 |
Study | Genome-wide meta-analysis identifies new susceptibility loci for migraine. |
Disease/Trait | Migraine |
Initial sample | 23,285 European ancestry cases, 95,425 European ancestry controls |
Replication sample | NA |
Region | 1q22 |
Chromosome id | chr1 |
Chromosome position | 156476450 |
Reported gene | MEF2D, APOA1BP |
Mapped gene | MEF2D |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 4209 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2274316-C |
SNPs | rs2274316 |
Merged | 0 |
SNP id current | 2274316 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.36 |
P value | 0.00000001 |
Pvalue mlog | 8 |
P value text | |
Or beta | 1.07 |
%95 Ci | [1.05-1.10] |
Platform | Affymetrix, Illumina [~ 2300000] (imputed) |
CNV | N |
Mapped trait | migraine disorder |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003821 |
Study accession | GCST002081 |
PubMed ID | 23793025 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23793025 |
Study | Genome-wide meta-analysis identifies new susceptibility loci for migraine. |
Disease/Trait | Migraine - clinic-based |
Initial sample | 5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls |
Replication sample | NA |
Region | 1q22 |
Chromosome id | chr1 |
Chromosome position | 156476450 |
Reported gene | MEF2D, APOA1BP |
Mapped gene | MEF2D |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 4209 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2274316-C |
SNPs | rs2274316 |
Merged | 0 |
SNP id current | 2274316 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.36 |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | |
Or beta | 1.14 |
%95 Ci | [1.09-1.20] |
Platform | Affymetrix, Illumina [~ 2300000] (imputed) |
CNV | N |
Mapped trait | migraine disorder |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003821 |
Study accession | GCST002079 |