SNP Detail For rs2273669
1.Mapping Information
Human SNP ID rs2273669
Human chromosome chr6
Human SNP position 108963986
Pig chromosome chr1
Pig SNP position 84341559
2.Annotation Information
PubMed ID23535732
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23535732
StudyIdentification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.
Disease/TraitProstate cancer
Initial sample11,085 European ancestry cases, 11,463 European ancestry controls
Replication sample19,662 European ancestry cases, 19,715 European ancestry controls
Region6q21
Chromosome idchr6
Chromosome position108963986
Reported geneLACE1, LINC0022, LINC00222, ARMC2, SESN1, CEP57L1, FOXO3
Mapped geneARMC2
Upstream gene id
Downstream gene id
SNP gene ids84071
Upstream gene distance
Downstream gene distance
SNP risk allelers2273669-G
SNPsrs2273669
Merged0
SNP id current2273669
Contextintron_variant
Intergenic0
Allele frequency0.15
P value0.000000008
Pvalue mlog8.09691001300805
P value text
Or beta1.07
%95 Ci[1.03-1.11]
PlatformIllumina [~ 2600000] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST001942