Human SNP ID | rs2273669 |
---|---|
Human chromosome | chr6 |
Human SNP position | 108963986 |
Pig chromosome | chr1 |
Pig SNP position | 84341559 |
PubMed ID | 23535732 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23535732 |
Study | Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. |
Disease/Trait | Prostate cancer |
Initial sample | 11,085 European ancestry cases, 11,463 European ancestry controls |
Replication sample | 19,662 European ancestry cases, 19,715 European ancestry controls |
Region | 6q21 |
Chromosome id | chr6 |
Chromosome position | 108963986 |
Reported gene | LACE1, LINC0022, LINC00222, ARMC2, SESN1, CEP57L1, FOXO3 |
Mapped gene | ARMC2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 84071 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2273669-G |
SNPs | rs2273669 |
Merged | 0 |
SNP id current | 2273669 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.15 |
P value | 0.000000008 |
Pvalue mlog | 8.09691001300805 |
P value text | |
Or beta | 1.07 |
%95 Ci | [1.03-1.11] |
Platform | Illumina [~ 2600000] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001942 |