SNP Detail For rs2273061
1.Mapping Information
Human SNP ID rs2273061
Human chromosome chr20
Human SNP position 10658895
Pig chromosome chr17
Pig SNP position 22089936
2.Annotation Information
PubMed ID20096396
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20096396
StudyAssociation of JAG1 with bone mineral density and osteoporotic fractures: a genome-wide association study and follow-up replication studies.
Disease/TraitBone mineral density
Initial sample785 Han Chinese ancestry extreme high and low BMD female individuals
Replication sample264 Han Chinese ancestry High BMD individuals, 456 Han Chinese ancestry Low BMD individuals, 3,465 Han Chinese ancestry individuals, 13,913 European ancestry individuals
Region20p12.2
Chromosome idchr20
Chromosome position10658895
Reported geneJAG1
Mapped geneJAG1
Upstream gene id
Downstream gene id
SNP gene ids182
Upstream gene distance
Downstream gene distance
SNP risk allelers2273061-A
SNPsrs2273061
Merged0
SNP id current2273061
Contextintron_variant
Intergenic0
Allele frequency0.31
P value0.00000005
Pvalue mlog7.30102999566398
P value text(lumbar spine)
Or beta0.07
%95 Ci[NR] s.d. increase
PlatformIllumina [488853]
CNVN
Mapped traitbone density
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003923
Study accessionGCST000572