SNP Detail For rs2272651
1.Mapping Information
Human SNP ID rs2272651
Human chromosome chr8
Human SNP position 133258305
Pig chromosome chr4
Pig SNP position 7916484
2.Annotation Information
PubMed ID23726511
JournalBiol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/23726511
StudyGenome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.
Disease/TraitPost-traumatic stress disorder (asjusted for relatedness)
Initial sampleup to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls
Replication sampleNA
Region8q24.22
Chromosome idchr8
Chromosome position133258305
Reported geneNDRG1
Mapped geneNDRG1
Upstream gene id
Downstream gene id
SNP gene ids10397
Upstream gene distance
Downstream gene distance
SNP risk allelers2272651-?
SNPsrs2272651
Merged0
SNP id current2272651
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text(Whole cohort; EA)
Or beta
%95 Ci
PlatformIllumina [up to 871502]
CNVN
Mapped traitpost-traumatic stress disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001358
Study accessionGCST002037