SNP Detail For rs2272046
1.Mapping Information
Human SNP ID rs2272046
Human chromosome chr12
Human SNP position 65830681
Pig chromosome chr5
Pig SNP position 33381574
2.Annotation Information
PubMed ID22885925
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22885925
StudyGenome-wide association study identifies eight new risk loci for polycystic ovary syndrome.
Disease/TraitPolycystic ovary syndrome
Initial sample2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls
Replication sample8,226 Han Chinese ancestry cases, 7,578 Han Chinese ancestry controls
Region12q14.3
Chromosome idchr12
Chromosome position65830681
Reported geneHMGA2
Mapped geneHMGA2
Upstream gene id
Downstream gene id
SNP gene ids8091
Upstream gene distance
Downstream gene distance
SNP risk allelers2272046-A
SNPsrs2272046
Merged0
SNP id current2272046
Contextintron_variant
Intergenic0
Allele frequency0.907
P value2E-21
Pvalue mlog20.698970004336
P value text
Or beta1.43
%95 Ci[NR]
PlatformAffymetrix [NR] (imputed)
CNVN
Mapped traitpolycystic ovary syndrome
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000660
Study accessionGCST001634