Human SNP ID | rs2272046 |
---|---|
Human chromosome | chr12 |
Human SNP position | 65830681 |
Pig chromosome | chr5 |
Pig SNP position | 33381574 |
PubMed ID | 22885925 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22885925 |
Study | Genome-wide association study identifies eight new risk loci for polycystic ovary syndrome. |
Disease/Trait | Polycystic ovary syndrome |
Initial sample | 2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls |
Replication sample | 8,226 Han Chinese ancestry cases, 7,578 Han Chinese ancestry controls |
Region | 12q14.3 |
Chromosome id | chr12 |
Chromosome position | 65830681 |
Reported gene | HMGA2 |
Mapped gene | HMGA2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 8091 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2272046-A |
SNPs | rs2272046 |
Merged | 0 |
SNP id current | 2272046 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.907 |
P value | 2E-21 |
Pvalue mlog | 20.698970004336 |
P value text | |
Or beta | 1.43 |
%95 Ci | [NR] |
Platform | Affymetrix [NR] (imputed) |
CNV | N |
Mapped trait | polycystic ovary syndrome |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000660 |
Study accession | GCST001634 |