Human SNP ID | rs2271920 |
---|---|
Human chromosome | chr8 |
Human SNP position | 27458600 |
Pig chromosome | chr14 |
Pig SNP position | 12374443 |
PubMed ID | 25778476 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/25778476 |
Study | A novel Alzheimer disease locus located near the gene encoding tau protein. |
Disease/Trait | Alzheimer__s disease in APOE e4- carriers |
Initial sample | 7,184 cases, 26,968 controls |
Replication sample | 718 European ancestry cases, 1,699 European ancestry controls |
Region | 8p21.2 |
Chromosome id | chr8 |
Chromosome position | 27458600 |
Reported gene | PTK2B |
Mapped gene | PTK2B |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 2185 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2271920-A |
SNPs | rs2271920 |
Merged | 0 |
SNP id current | 2271920 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.39 |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | |
Or beta | 1.11 |
%95 Ci | [1.06-1.16] |
Platform | NR [NR] |
CNV | N |
Mapped trait | Alzheimers disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000249 |
Study accession | GCST002817 |