SNP Detail For rs2271920
1.Mapping Information
Human SNP ID rs2271920
Human chromosome chr8
Human SNP position 27458600
Pig chromosome chr14
Pig SNP position 12374443
2.Annotation Information
PubMed ID25778476
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/25778476
StudyA novel Alzheimer disease locus located near the gene encoding tau protein.
Disease/TraitAlzheimer__s disease in APOE e4- carriers
Initial sample7,184 cases, 26,968 controls
Replication sample718 European ancestry cases, 1,699 European ancestry controls
Region8p21.2
Chromosome idchr8
Chromosome position27458600
Reported genePTK2B
Mapped genePTK2B
Upstream gene id
Downstream gene id
SNP gene ids2185
Upstream gene distance
Downstream gene distance
SNP risk allelers2271920-A
SNPsrs2271920
Merged0
SNP id current2271920
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.39
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta1.11
%95 Ci[1.06-1.16]
PlatformNR [NR]
CNVN
Mapped traitAlzheimers disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000249
Study accessionGCST002817