SNP Detail For rs2271749
1.Mapping Information
Human SNP ID rs2271749
Human chromosome chr4
Human SNP position 16166331
Pig chromosome chr8
Pig SNP position 11021618
2.Annotation Information
PubMed ID24665060
JournalJ Med Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24665060
StudyGenome-wide association study of smoking behaviours among Bangladeshi adults.
Disease/TraitSmoking initiation
Initial sample754 Bangladeshi ancestry never smoker males, 2,565 Bangladeshi ancestry never smoker females, 1,837 Bangladeshi ancestry ever smoker males, 198 Bangladeshi ancestry ever smoker females
Replication sampleNA
Region4p15.32
Chromosome idchr4
Chromosome position16166331
Reported geneNR
Mapped geneTAPT1
Upstream gene id
Downstream gene id
SNP gene ids202018
Upstream gene distance
Downstream gene distance
SNP risk allelers2271749-?
SNPsrs2271749
Merged0
SNP id current2271749
Contextintron_variant
Intergenic0
Allele frequency
P value0.000003
Pvalue mlog5.52287874528033
P value text(females)
Or beta
%95 Ci
PlatformIllumina [1211988] (imputed)
CNVN
Mapped traitsmoking initiation
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005670
Study accessionGCST002396