Human SNP ID | rs2271293 |
---|---|
Human chromosome | chr16 |
Human SNP position | 67868167 |
Pig chromosome | chr6 |
Pig SNP position | 25646236 |
PubMed ID | 19060911 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19060911 |
Study | Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts. |
Disease/Trait | HDL cholesterol |
Initial sample | 20,697 European ancestry individuals, 715 Orcadian individuals |
Replication sample | NA |
Region | 16q22.1 |
Chromosome id | chr16 |
Chromosome position | 67868167 |
Reported gene | CTCF, PRMT8 |
Mapped gene | NUTF2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10204 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2271293-G |
SNPs | rs2271293 |
Merged | 0 |
SNP id current | 2271293 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.87 |
P value | 0.0000000000000008 |
Pvalue mlog | 15.096910013008 |
P value text | |
Or beta | 0.13 |
%95 Ci | [NR] s.d. decrease |
Platform | Affymetrix, Illumina [up to 600000] |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST000288 |
PubMed ID | 19060906 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19060906 |
Study | Common variants at 30 loci contribute to polygenic dyslipidemia. |
Disease/Trait | HDL cholesterol |
Initial sample | 19,840 European ancestry individuals |
Replication sample | Up to 20,623 European ancestry individuals |
Region | 16q22.1 |
Chromosome id | chr16 |
Chromosome position | 67868167 |
Reported gene | LCAT |
Mapped gene | NUTF2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10204 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2271293-A |
SNPs | rs2271293 |
Merged | 0 |
SNP id current | 2271293 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.11 |
P value | 0.0000000000009 |
Pvalue mlog | 12.0457574905606 |
P value text | |
Or beta | 0.07 |
%95 Ci | [0.01-0.13] s.d. increase |
Platform | Affymetrix, Illumina [~ 2600000] (imputed) |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST000290 |