SNP Detail For rs2270968
1.Mapping Information
Human SNP ID rs2270968
Human chromosome chr3
Human SNP position 183037421
Pig chromosome chr13
Pig SNP position 130290663
2.Annotation Information
PubMed ID24816252
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24816252
StudyAn atlas of genetic influences on human blood metabolites.
Disease/TraitBlood metabolite levels
Initial sample7,824 European ancestry individuals
Replication sampleNA
Region3q27.1
Chromosome idchr3
Chromosome position183037421
Reported geneMCCC1
Mapped geneMCCC1
Upstream gene id
Downstream gene id
SNP gene ids56922
Upstream gene distance
Downstream gene distance
SNP risk allelers2270968-T
SNPsrs2270968
Merged0
SNP id current2270968
Contextmissense_variant
Intergenic0
Allele frequency0.26
P value0.0000000000000001
Pvalue mlog16
P value text(hydroxyisovaleroyl carnitine)
Or beta0.031
%95 Ci[0.023-0.039] unit increase
PlatformAffymetrix, Illumina [2100000] (imputed)
CNVN
Mapped traitblood metabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005664
Study accessionGCST002443