SNP Detail For rs2270778
1.Mapping Information
Human SNP ID rs2270778
Human chromosome chr3
Human SNP position 124973845
Pig chromosome chr13
Pig SNP position 144702302
2.Annotation Information
PubMed ID24939585
JournalEur J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24939585
StudyGenome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.
Disease/TraitAge-related hearing impairment (interaction)
Initial sample1,489 European ancestry individuals
Replication sampleNA
Region3q21.2 x 5q34
Chromosome idchr3 x 5
Chromosome position124973845 x 163323364
Reported geneNR x NR
Mapped geneHEG1 x LOC105377699 - LOC105377700
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers2270778-? x rs300238-?
SNPsrs2270778 x rs300238
Merged
SNP id current
Contextsynonymous_variant x intron_variant
Intergenic
Allele frequencyNR
P value0.000000007
Pvalue mlog8.15490195998574
P value text
Or beta
%95 Ci
PlatformIllumina [629437] (imputed)
CNVN
Mapped traitage-related hearing impairment
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005782
Study accessionGCST002487