SNP Detail For rs2270450
1.Mapping Information
Human SNP ID rs2270450
Human chromosome chr6
Human SNP position 46677138
Pig chromosome chr7
Pig SNP position 48120011
2.Annotation Information
PubMed ID25429627
JournalJ Clin Endocrinol Metab
Linkwww.ncbi.nlm.nih.gov/pubmed/25429627
StudyIdentification of a Hashimoto thyroiditis susceptibility locus via a genome-wide comparison with Graves__ disease.
Disease/TraitHashimoto thyroiditis versus Graves__ disease
Initial sample263 Japanese ancestry Hashimoto thyroiditis cases, 260 Japanese ancestry Graves鈥?disease cases
Replication sample181 Japanese ancestry Hashimoto thyroiditis cases, 286 Japanese ancestry Graves鈥?disease cases
Region6p12.3
Chromosome idchr6
Chromosome position46677138
Reported geneSLC25A27
Mapped geneLOC101926934, SLC25A27
Upstream gene id
Downstream gene id
SNP gene ids101926934, 9481
Upstream gene distance
Downstream gene distance
SNP risk allelers2270450-T
SNPsrs2270450
Merged0
SNP id current2270450
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.178
P value0.000001
Pvalue mlog6
P value text
Or beta1.75
%95 Ci[1.40-2.19]
PlatformIllumina [546173]
CNVN
Mapped traitautoimmune thyroid disease, Hashimoto__s thyroiditis, Graves disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006812, http://www.ebi.ac.uk/efo/EFO_0003779, http://www.ebi.ac.uk/efo/EFO_0004237
Study accessionGCST002705