SNP Detail For rs2269372
1.Mapping Information
Human SNP ID rs2269372
Human chromosome chrX
Human SNP position 153942092
Pig chromosome chrX
Pig SNP position 142232379
2.Annotation Information
PubMed ID24043878
JournalSchizophr Bull
Linkwww.ncbi.nlm.nih.gov/pubmed/24043878
StudyCommon variants on Xq28 conferring risk of schizophrenia in Han Chinese.
Disease/TraitSchizophrenia
Initial sample481 Han Chinese ancestry cases, 2,025 Han Chinese ancestry controls
Replication sample1,088 Han Chinese ancestry cases, 1,063 Han Chinese ancestry controls
RegionXq28
Chromosome idchrX
Chromosome position153942092
Reported geneRENBP, MECP2, ARHGAP4
Mapped geneRENBP
Upstream gene id
Downstream gene id
SNP gene ids5973
Upstream gene distance
Downstream gene distance
SNP risk allelers2269372-A
SNPsrs2269372
Merged0
SNP id current2269372
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000004
Pvalue mlog7.39794000867203
P value text
Or beta1.313
%95 Ci[NR]
PlatformIllumina [2383054] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST002190