SNP Detail For rs2266961
1.Mapping Information
Human SNP ID rs2266961
Human chromosome chr22
Human SNP position 21574308
Pig chromosome chr14
Pig SNP position 53760258
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitInflammatory bowel disease
Initial sample12,882 European ancestry cases, 21,770 European ancestry controls
Replication sample25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region22q11.21
Chromosome idchr22
Chromosome position21574308
Reported geneNR
Mapped geneUBE2L3
Upstream gene id
Downstream gene id
SNP gene ids7332
Upstream gene distance
Downstream gene distance
SNP risk allelers2266961-?
SNPsrs2266961
Merged
SNP id current2266961
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000000000003
Pvalue mlog12.5228787452803
P value text(EA)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitinflammatory bowel disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST003043