SNP Detail For rs2257205
1.Mapping Information
Human SNP ID rs2257205
Human chromosome chr17
Human SNP position 58370936
Pig chromosome chr12
Pig SNP position 36166273
2.Annotation Information
PubMed ID20686608
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/20686608
StudyGenome-wide association study of pancreatic cancer in Japanese population.
Disease/TraitPancreatic cancer
Initial sample991 Japanese ancestry cases, 5,209 Japanese ancestry controls
Replication sampleNA
Region17q22
Chromosome idchr17
Chromosome position58370936
Reported geneRNF43
Mapped geneRNF43
Upstream gene id
Downstream gene id
SNP gene ids54894
Upstream gene distance
Downstream gene distance
SNP risk allelers2257205-A
SNPsrs2257205
Merged0
SNP id current2257205
Contextmissense_variant
Intergenic0
Allele frequency0.33
P value0.000008
Pvalue mlog5.09691001300805
P value text(dominant)
Or beta1.38
%95 Ci[1.20-1.59]
PlatformIllumina [420236]
CNVN
Mapped traitpancreatic carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002618
Study accessionGCST000745