Human SNP ID | rs2257205 |
---|---|
Human chromosome | chr17 |
Human SNP position | 58370936 |
Pig chromosome | chr12 |
Pig SNP position | 36166273 |
PubMed ID | 20686608 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/20686608 |
Study | Genome-wide association study of pancreatic cancer in Japanese population. |
Disease/Trait | Pancreatic cancer |
Initial sample | 991 Japanese ancestry cases, 5,209 Japanese ancestry controls |
Replication sample | NA |
Region | 17q22 |
Chromosome id | chr17 |
Chromosome position | 58370936 |
Reported gene | RNF43 |
Mapped gene | RNF43 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 54894 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2257205-A |
SNPs | rs2257205 |
Merged | 0 |
SNP id current | 2257205 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.33 |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | (dominant) |
Or beta | 1.38 |
%95 Ci | [1.20-1.59] |
Platform | Illumina [420236] |
CNV | N |
Mapped trait | pancreatic carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002618 |
Study accession | GCST000745 |