SNP Detail For rs225717
1.Mapping Information
Human SNP ID rs225717
Human chromosome chr6
Human SNP position 142226962
Pig chromosome chr1
Pig SNP position 25581503
2.Annotation Information
PubMed ID21060863
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21060863
StudyFour novel Loci (19q13, 6q24, 12q24, and 5q14) influence the microcirculation in vivo.
Disease/TraitRetinal vascular caliber
Initial sample15,358 European ancestry individuals
Replication sample6,652 European ancestry individuals
Region6q24.2
Chromosome idchr6
Chromosome position142226962
Reported geneVTA1, NMBR
Mapped geneVTA1 - LOC105378032
Upstream gene id51534
Downstream gene id105378032
SNP gene ids
Upstream gene distance6014
Downstream gene distance15352
SNP risk allelers225717-C
SNPsrs225717
Merged0
SNP id current225717
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.23
P value0.0000000000000001
Pvalue mlog16
P value text(Retinal venular caliber)
Or beta1.9
%95 Ci[1.45-2.35] um decrease
PlatformAffymetrix, Illumina [2194468] (imputed)
CNVN
Mapped traiteye measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004731
Study accessionGCST000847