Human SNP ID | rs225717 |
---|---|
Human chromosome | chr6 |
Human SNP position | 142226962 |
Pig chromosome | chr1 |
Pig SNP position | 25581503 |
PubMed ID | 21060863 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21060863 |
Study | Four novel Loci (19q13, 6q24, 12q24, and 5q14) influence the microcirculation in vivo. |
Disease/Trait | Retinal vascular caliber |
Initial sample | 15,358 European ancestry individuals |
Replication sample | 6,652 European ancestry individuals |
Region | 6q24.2 |
Chromosome id | chr6 |
Chromosome position | 142226962 |
Reported gene | VTA1, NMBR |
Mapped gene | VTA1 - LOC105378032 |
Upstream gene id | 51534 |
Downstream gene id | 105378032 |
SNP gene ids | |
Upstream gene distance | 6014 |
Downstream gene distance | 15352 |
SNP risk allele | rs225717-C |
SNPs | rs225717 |
Merged | 0 |
SNP id current | 225717 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.23 |
P value | 0.0000000000000001 |
Pvalue mlog | 16 |
P value text | (Retinal venular caliber) |
Or beta | 1.9 |
%95 Ci | [1.45-2.35] um decrease |
Platform | Affymetrix, Illumina [2194468] (imputed) |
CNV | N |
Mapped trait | eye measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004731 |
Study accession | GCST000847 |