SNP Detail For rs2253612
1.Mapping Information
Human SNP ID rs2253612
Human chromosome chr2
Human SNP position 200703710
Pig chromosome chr15
Pig SNP position 115530563
2.Annotation Information
PubMed ID26365420
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26365420
StudyThe genetics of alcohol dependence: Twin and SNP-based heritability, and genome-wide association study based on AUDIT scores.
Disease/TraitAlcohol dependence
Initial sample1,374 European ancestry cases and 6,468 European ancestry controls from 7,694 twin pairs
Replication sampleNA
Region2q33.1
Chromosome idchr2
Chromosome position200703710
Reported geneAOX2P
Mapped geneAOX2P
Upstream gene id
Downstream gene id
SNP gene ids344454
Upstream gene distance
Downstream gene distance
SNP risk allelers2253612-C
SNPsrs2253612
Merged
SNP id current2253612
Contextintron_variant
Intergenic0
Allele frequency0.09
P value0.0000008
Pvalue mlog6.09691001300805
P value text
Or beta1.4285715
%95 Ci[1.29-1.57]
PlatformAffymetrix, Illumina, Perlegen [6464174] (imputed)
CNVN
Mapped traitalcohol dependence
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003829
Study accessionGCST003121