Human SNP ID | rs2253612 |
---|---|
Human chromosome | chr2 |
Human SNP position | 200703710 |
Pig chromosome | chr15 |
Pig SNP position | 115530563 |
PubMed ID | 26365420 |
---|---|
Journal | Am J Med Genet B Neuropsychiatr Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26365420 |
Study | The genetics of alcohol dependence: Twin and SNP-based heritability, and genome-wide association study based on AUDIT scores. |
Disease/Trait | Alcohol dependence |
Initial sample | 1,374 European ancestry cases and 6,468 European ancestry controls from 7,694 twin pairs |
Replication sample | NA |
Region | 2q33.1 |
Chromosome id | chr2 |
Chromosome position | 200703710 |
Reported gene | AOX2P |
Mapped gene | AOX2P |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 344454 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2253612-C |
SNPs | rs2253612 |
Merged | |
SNP id current | 2253612 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.09 |
P value | 0.0000008 |
Pvalue mlog | 6.09691001300805 |
P value text | |
Or beta | 1.4285715 |
%95 Ci | [1.29-1.57] |
Platform | Affymetrix, Illumina, Perlegen [6464174] (imputed) |
CNV | N |
Mapped trait | alcohol dependence |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003829 |
Study accession | GCST003121 |