SNP Detail For rs2252996
1.Mapping Information
Human SNP ID rs2252996
Human chromosome chr10
Human SNP position 71356185
Pig chromosome chr14
Pig SNP position 80151314
2.Annotation Information
PubMed ID23273568
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23273568
StudyMeta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.
Disease/TraitSystemic lupus erythematosus
Initial sample1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls
Replication sample3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls
Region10q22.1
Chromosome idchr10
Chromosome position71356185
Reported geneSLC29A3
Mapped geneSLC29A3
Upstream gene id
Downstream gene id
SNP gene ids55315
Upstream gene distance
Downstream gene distance
SNP risk allelers2252996-A
SNPsrs2252996
Merged0
SNP id current2252996
Contextmissense_variant
Intergenic0
Allele frequency0.68
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta1.2195
%95 Ci
PlatformIllumina [2100739] (imputed)
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST001795