SNP Detail For rs225190
1.Mapping Information
Human SNP ID rs225190
Human chromosome chr17
Human SNP position 32550640
Pig chromosome chr12
Pig SNP position 44186398
2.Annotation Information
PubMed ID20686608
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/20686608
StudyGenome-wide association study of pancreatic cancer in Japanese population.
Disease/TraitPancreatic cancer
Initial sample991 Japanese ancestry cases, 5,209 Japanese ancestry controls
Replication sampleNA
Region17q11.2
Chromosome idchr17
Chromosome position32550640
Reported geneMYO1D
Mapped geneMYO1D
Upstream gene id
Downstream gene id
SNP gene ids4642
Upstream gene distance
Downstream gene distance
SNP risk allelers225190-G
SNPsrs225190
Merged0
SNP id current225190
Contextintron_variant
Intergenic0
Allele frequency0.36
P value0.000006
Pvalue mlog5.22184874961635
P value text(allelic)
Or beta1.26
%95 Ci[1.14-1.39]
PlatformIllumina [420236]
CNVN
Mapped traitpancreatic carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002618
Study accessionGCST000745