SNP Detail For rs2251219
1.Mapping Information
Human SNP ID rs2251219
Human chromosome chr3
Human SNP position 52550771
Pig chromosome chr13
Pig SNP position 37903228
2.Annotation Information
PubMed ID20081856
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20081856
StudyMeta-analysis of genome-wide association data identifies a risk locus for major mood disorders on 3p21.1.
Disease/TraitMajor mood disorders
Initial sample6,686 European ancestry cases, 9,068 European ancestry controls
Replication sample1,930 European ancestry cases, 2,747 European ancestry controls
Region3p21.1
Chromosome idchr3
Chromosome position52550771
Reported genePBRM1
Mapped genePBRM1
Upstream gene id
Downstream gene id
SNP gene ids55193
Upstream gene distance
Downstream gene distance
SNP risk allelers2251219-?
SNPsrs2251219
Merged0
SNP id current2251219
Contextsynonymous_variant
Intergenic0
Allele frequency0.59
P value0.000000002
Pvalue mlog8.69897000433601
P value text
Or beta1.14
%95 Ci[1.09-1.18]
PlatformAffymetrix, Illumina, Perlegen [~ 2100000] (imputed)
CNVN
Mapped traitmood disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004247
Study accessionGCST000570