Human SNP ID | rs2251219 |
---|---|
Human chromosome | chr3 |
Human SNP position | 52550771 |
Pig chromosome | chr13 |
Pig SNP position | 37903228 |
PubMed ID | 20081856 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20081856 |
Study | Meta-analysis of genome-wide association data identifies a risk locus for major mood disorders on 3p21.1. |
Disease/Trait | Major mood disorders |
Initial sample | 6,686 European ancestry cases, 9,068 European ancestry controls |
Replication sample | 1,930 European ancestry cases, 2,747 European ancestry controls |
Region | 3p21.1 |
Chromosome id | chr3 |
Chromosome position | 52550771 |
Reported gene | PBRM1 |
Mapped gene | PBRM1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 55193 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2251219-? |
SNPs | rs2251219 |
Merged | 0 |
SNP id current | 2251219 |
Context | synonymous_variant |
Intergenic | 0 |
Allele frequency | 0.59 |
P value | 0.000000002 |
Pvalue mlog | 8.69897000433601 |
P value text | |
Or beta | 1.14 |
%95 Ci | [1.09-1.18] |
Platform | Affymetrix, Illumina, Perlegen [~ 2100000] (imputed) |
CNV | N |
Mapped trait | mood disorder |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004247 |
Study accession | GCST000570 |