SNP Detail For rs2248359
1.Mapping Information
Human SNP ID rs2248359
Human chromosome chr20
Human SNP position 54174979
Pig chromosome chr17
Pig SNP position 61913317
2.Annotation Information
PubMed ID21833088
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/21833088
StudyGenetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
Disease/TraitMultiple sclerosis
Initial sample9,772 European ancestry cases, 16,849 European ancestry controls
Replication sample4,218 European ancestry cases, 7,296 European ancestry controls
Region20q13.2
Chromosome idchr20
Chromosome position54174979
Reported geneCYP24A1
Mapped geneCYP24A1 - LOC105372675
Upstream gene id1591
Downstream gene id105372675
SNP gene ids
Upstream gene distance994
Downstream gene distance3419
SNP risk allelers2248359-G
SNPsrs2248359
Merged0
SNP id current2248359
Contextupstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.00000000003
Pvalue mlog10.5228787452803
P value text
Or beta1.12
%95 Ci[1.1-1.13]
PlatformIllumina [465434]
CNVN
Mapped traitmultiple sclerosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003885
Study accessionGCST001198