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SNP Detail For rs2245368
1.Mapping Information
| Human SNP ID | rs2245368 |
|---|---|
| Human chromosome | chr7 |
| Human SNP position | 76978826 |
| Pig chromosome | chr3 |
| Pig SNP position | 9788458 |
2.Annotation Information
| PubMed ID | 25673413 |
|---|---|
| Journal | Nature |
| Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
| Study | Genetic studies of body mass index yield new insights for obesity biology. |
| Disease/Trait | Body mass index |
| Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
| Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
| Region | 7q11.23 |
| Chromosome id | chr7 |
| Chromosome position | 76978826 |
| Reported gene | PMS2L11 |
| Mapped gene | LOC105375361 - DTX2P1-UPK3BP1-PMS2P11 |
| Upstream gene id | 105375361 |
| Downstream gene id | 441263 |
| SNP gene ids | |
| Upstream gene distance | 1605 |
| Downstream gene distance | 1996 |
| SNP risk allele | rs2245368-C |
| SNPs | rs2245368 |
| Merged | 0 |
| SNP id current | 2245368 |
| Context | non_coding_transcript_exon_variant |
| Intergenic | 1 |
| Allele frequency | 0.18 |
| P value | 0.000001 |
| Pvalue mlog | 6 |
| P value text | (EA, men) |
| Or beta | 0.034 |
| %95 Ci | [0.02-0.048] kg/m2 increase |
| Platform | Affymetrix, Illumina [2550021] |
| CNV | N |
| Mapped trait | body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002783 |
| PubMed ID | 25673413 |
| Journal | Nature |
| Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
| Study | Genetic studies of body mass index yield new insights for obesity biology. |
| Disease/Trait | Body mass index |
| Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
| Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
| Region | 7q11.23 |
| Chromosome id | chr7 |
| Chromosome position | 76978826 |
| Reported gene | PMS2L11 |
| Mapped gene | LOC105375361 - DTX2P1-UPK3BP1-PMS2P11 |
| Upstream gene id | 105375361 |
| Downstream gene id | 441263 |
| SNP gene ids | |
| Upstream gene distance | 1605 |
| Downstream gene distance | 1996 |
| SNP risk allele | rs2245368-C |
| SNPs | rs2245368 |
| Merged | 0 |
| SNP id current | 2245368 |
| Context | non_coding_transcript_exon_variant |
| Intergenic | 1 |
| Allele frequency | 0.18 |
| P value | 0.00000003 |
| Pvalue mlog | 7.52287874528033 |
| P value text | (EA) |
| Or beta | 0.032 |
| %95 Ci | [0.021-0.043] kg/m2 increase |
| Platform | Affymetrix, Illumina [2550021] |
| CNV | N |
| Mapped trait | body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002783 |
| PubMed ID | 25673413 |
| Journal | Nature |
| Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
| Study | Genetic studies of body mass index yield new insights for obesity biology. |
| Disease/Trait | Body mass index |
| Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
| Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
| Region | 7q11.23 |
| Chromosome id | chr7 |
| Chromosome position | 76978826 |
| Reported gene | PMS2L11 |
| Mapped gene | LOC105375361 - DTX2P1-UPK3BP1-PMS2P11 |
| Upstream gene id | 105375361 |
| Downstream gene id | 441263 |
| SNP gene ids | |
| Upstream gene distance | 1605 |
| Downstream gene distance | 1996 |
| SNP risk allele | rs2245368-C |
| SNPs | rs2245368 |
| Merged | 0 |
| SNP id current | 2245368 |
| Context | non_coding_transcript_exon_variant |
| Intergenic | 1 |
| Allele frequency | 0.19 |
| P value | 0.00000007 |
| Pvalue mlog | 7.15490195998574 |
| P value text | |
| Or beta | 0.029 |
| %95 Ci | [0.018-0.039] kg/m2 increase |
| Platform | Affymetrix, Illumina [2550021] |
| CNV | N |
| Mapped trait | body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002783 |
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