SNP Detail For rs2243407
1.Mapping Information
Human SNP ID rs2243407
Human chromosome chr8
Human SNP position 11622948
Pig chromosome chr14
Pig SNP position 15987931
2.Annotation Information
PubMed ID24024966
JournalJ Clin Periodontol
Linkwww.ncbi.nlm.nih.gov/pubmed/24024966
StudyGenome-wide association study of chronic periodontitis in a general German population.
Disease/TraitPeriodontitis (CDC/AAP)
Initial sampleup to 3,915 European ancestry individuals
Replication sampleNA
Region8p23.1
Chromosome idchr8
Chromosome position11622948
Reported geneBLK
Mapped geneLINC00208 - LOC105379242
Upstream gene id83655
Downstream gene id105379242
SNP gene ids
Upstream gene distance41607
Downstream gene distance9266
SNP risk allelers2243407-?
SNPsrs2243407
Merged0
SNP id current2243407
Contextintergenic_variant
Intergenic1
Allele frequency0.65
P value0.000009
Pvalue mlog5.04575749056067
P value text(Age 20-81 years)
Or beta1.3
%95 Ci[1.16-1.47]
PlatformAffymetrix, Illumina [up to 17585496] (imputed)
CNVN
Mapped traitperiodontitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000649
Study accessionGCST002126
PubMed ID24024966
JournalJ Clin Periodontol
Linkwww.ncbi.nlm.nih.gov/pubmed/24024966
StudyGenome-wide association study of chronic periodontitis in a general German population.
Disease/TraitPeriodontitis (CDC/AAP)
Initial sampleup to 3,915 European ancestry individuals
Replication sampleNA
Region8p23.1
Chromosome idchr8
Chromosome position11622948
Reported geneLINC00208
Mapped geneLINC00208 - LOC105379242
Upstream gene id83655
Downstream gene id105379242
SNP gene ids
Upstream gene distance41607
Downstream gene distance9266
SNP risk allelers2243407-?
SNPsrs2243407
Merged0
SNP id current2243407
Contextintergenic_variant
Intergenic1
Allele frequency0.64
P value0.000006
Pvalue mlog5.22184874961635
P value text(Age 20-60 years)
Or beta1.33
%95 Ci[1.18-1.49]
PlatformAffymetrix, Illumina [up to 17585496] (imputed)
CNVN
Mapped traitperiodontitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000649
Study accessionGCST002126
PubMed ID24024966
JournalJ Clin Periodontol
Linkwww.ncbi.nlm.nih.gov/pubmed/24024966
StudyGenome-wide association study of chronic periodontitis in a general German population.
Disease/TraitPeriodontitis (CDC/AAP)
Initial sampleup to 3,915 European ancestry individuals
Replication sampleNA
Region8p23.1
Chromosome idchr8
Chromosome position11622948
Reported geneBLK
Mapped geneLINC00208 - LOC105379242
Upstream gene id83655
Downstream gene id105379242
SNP gene ids
Upstream gene distance41607
Downstream gene distance9266
SNP risk allelers2243407-?
SNPsrs2243407
Merged0
SNP id current2243407
Contextintergenic_variant
Intergenic1
Allele frequency0.65
P value0.000006
Pvalue mlog5.22184874961635
P value text(Age 20-60 years)
Or beta1.33
%95 Ci[1.18-1.52]
PlatformAffymetrix, Illumina [up to 17585496] (imputed)
CNVN
Mapped traitperiodontitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000649
Study accessionGCST002126