Human SNP ID | rs2243407 |
---|---|
Human chromosome | chr8 |
Human SNP position | 11622948 |
Pig chromosome | chr14 |
Pig SNP position | 15987931 |
PubMed ID | 24024966 |
---|---|
Journal | J Clin Periodontol |
Link | www.ncbi.nlm.nih.gov/pubmed/24024966 |
Study | Genome-wide association study of chronic periodontitis in a general German population. |
Disease/Trait | Periodontitis (CDC/AAP) |
Initial sample | up to 3,915 European ancestry individuals |
Replication sample | NA |
Region | 8p23.1 |
Chromosome id | chr8 |
Chromosome position | 11622948 |
Reported gene | BLK |
Mapped gene | LINC00208 - LOC105379242 |
Upstream gene id | 83655 |
Downstream gene id | 105379242 |
SNP gene ids | |
Upstream gene distance | 41607 |
Downstream gene distance | 9266 |
SNP risk allele | rs2243407-? |
SNPs | rs2243407 |
Merged | 0 |
SNP id current | 2243407 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.65 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | (Age 20-81 years) |
Or beta | 1.3 |
%95 Ci | [1.16-1.47] |
Platform | Affymetrix, Illumina [up to 17585496] (imputed) |
CNV | N |
Mapped trait | periodontitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000649 |
Study accession | GCST002126 |
PubMed ID | 24024966 |
Journal | J Clin Periodontol |
Link | www.ncbi.nlm.nih.gov/pubmed/24024966 |
Study | Genome-wide association study of chronic periodontitis in a general German population. |
Disease/Trait | Periodontitis (CDC/AAP) |
Initial sample | up to 3,915 European ancestry individuals |
Replication sample | NA |
Region | 8p23.1 |
Chromosome id | chr8 |
Chromosome position | 11622948 |
Reported gene | LINC00208 |
Mapped gene | LINC00208 - LOC105379242 |
Upstream gene id | 83655 |
Downstream gene id | 105379242 |
SNP gene ids | |
Upstream gene distance | 41607 |
Downstream gene distance | 9266 |
SNP risk allele | rs2243407-? |
SNPs | rs2243407 |
Merged | 0 |
SNP id current | 2243407 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.64 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | (Age 20-60 years) |
Or beta | 1.33 |
%95 Ci | [1.18-1.49] |
Platform | Affymetrix, Illumina [up to 17585496] (imputed) |
CNV | N |
Mapped trait | periodontitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000649 |
Study accession | GCST002126 |
PubMed ID | 24024966 |
Journal | J Clin Periodontol |
Link | www.ncbi.nlm.nih.gov/pubmed/24024966 |
Study | Genome-wide association study of chronic periodontitis in a general German population. |
Disease/Trait | Periodontitis (CDC/AAP) |
Initial sample | up to 3,915 European ancestry individuals |
Replication sample | NA |
Region | 8p23.1 |
Chromosome id | chr8 |
Chromosome position | 11622948 |
Reported gene | BLK |
Mapped gene | LINC00208 - LOC105379242 |
Upstream gene id | 83655 |
Downstream gene id | 105379242 |
SNP gene ids | |
Upstream gene distance | 41607 |
Downstream gene distance | 9266 |
SNP risk allele | rs2243407-? |
SNPs | rs2243407 |
Merged | 0 |
SNP id current | 2243407 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.65 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | (Age 20-60 years) |
Or beta | 1.33 |
%95 Ci | [1.18-1.52] |
Platform | Affymetrix, Illumina [up to 17585496] (imputed) |
CNV | N |
Mapped trait | periodontitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000649 |
Study accession | GCST002126 |