Human SNP ID | rs224278 |
---|---|
Human chromosome | chr10 |
Human SNP position | 62820815 |
Pig chromosome | chr14 |
Pig SNP position | 71526384 |
PubMed ID | 22327514 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22327514 |
Study | Common variants near TARDBP and EGR2 are associated with susceptibility to Ewing sarcoma. |
Disease/Trait | Ewing sarcoma |
Initial sample | Up to 427 European ancestry cases, up to 4,352 European ancestry controls |
Replication sample | 661 European ancestry cases, 1,299 European ancestry controls |
Region | 10q21.3 |
Chromosome id | chr10 |
Chromosome position | 62820815 |
Reported gene | EGR2, ADO, ZNF365 |
Mapped gene | EGR2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 1959 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs224278-C |
SNPs | rs224278 |
Merged | 0 |
SNP id current | 224278 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.58 |
P value | 0.00000000000000004 |
Pvalue mlog | 16.397940008672 |
P value text | |
Or beta | 1.66 |
%95 Ci | [1.42-1.93] |
Platform | NR [286966] |
CNV | N |
Mapped trait | Ewing sarcoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000174 |
Study accession | GCST001407 |