Human SNP ID | rs2242652 |
---|---|
Human chromosome | chr5 |
Human SNP position | 1279913 |
Pig chromosome | chr16 |
Pig SNP position | 85923227 |
PubMed ID | 21743467 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21743467 |
Study | Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study. |
Disease/Trait | Prostate cancer |
Initial sample | 6,621 European ancestry cases, 6,939 European ancestry controls |
Replication sample | 22,957 European ancestry cases, 23,234 European ancestry controls, 420 East Asian ancestry cases, 433 East Asian ancestry controls, 112 African American cases, 298 African American controls, 7,140 cases, 5,455 controls |
Region | 5p15.33 |
Chromosome id | chr5 |
Chromosome position | 1279913 |
Reported gene | TERT |
Mapped gene | TERT |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 7015 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2242652-G |
SNPs | rs2242652 |
Merged | 0 |
SNP id current | 2242652 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.81 |
P value | 3E-24 |
Pvalue mlog | 23.5228787452803 |
P value text | |
Or beta | 1.15 |
%95 Ci | [1.11-1.19] |
Platform | NR [2600000] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001148 |