SNP Detail For rs2242652
1.Mapping Information
Human SNP ID rs2242652
Human chromosome chr5
Human SNP position 1279913
Pig chromosome chr16
Pig SNP position 85923227
2.Annotation Information
PubMed ID21743467
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21743467
StudySeven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study.
Disease/TraitProstate cancer
Initial sample6,621 European ancestry cases, 6,939 European ancestry controls
Replication sample22,957 European ancestry cases, 23,234 European ancestry controls, 420 East Asian ancestry cases, 433 East Asian ancestry controls, 112 African American cases, 298 African American controls, 7,140 cases, 5,455 controls
Region5p15.33
Chromosome idchr5
Chromosome position1279913
Reported geneTERT
Mapped geneTERT
Upstream gene id
Downstream gene id
SNP gene ids7015
Upstream gene distance
Downstream gene distance
SNP risk allelers2242652-G
SNPsrs2242652
Merged0
SNP id current2242652
Contextintron_variant
Intergenic0
Allele frequency0.81
P value3E-24
Pvalue mlog23.5228787452803
P value text
Or beta1.15
%95 Ci[1.11-1.19]
PlatformNR [2600000] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST001148