Human SNP ID | rs2240466 |
---|---|
Human chromosome | chr7 |
Human SNP position | 73441939 |
Pig chromosome | chr3 |
Pig SNP position | 10462283 |
PubMed ID | 19060911 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19060911 |
Study | Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts. |
Disease/Trait | Triglycerides |
Initial sample | 17,100 European ancestry individuals, 715 Orcadian individuals |
Replication sample | NA |
Region | 7q11.23 |
Chromosome id | chr7 |
Chromosome position | 73441939 |
Reported gene | MLXIPL |
Mapped gene | BAZ1B |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 9031 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2240466-G |
SNPs | rs2240466 |
Merged | 0 |
SNP id current | 2240466 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.87 |
P value | 0.000000000001 |
Pvalue mlog | 12 |
P value text | |
Or beta | 0.14 |
%95 Ci | [NR] s.d. increase |
Platform | Affymetrix, Illumina [up to 600000] |
CNV | N |
Mapped trait | triglyceride measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004530 |
Study accession | GCST000289 |
PubMed ID | 21490707 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21490707 |
Study | Genome-wide meta-analysis identifies regions on 7p21 (AHR) and 15q24 (CYP1A2) as determinants of habitual caffeine consumption. |
Disease/Trait | Caffeine consumption |
Initial sample | 47,431 European ancestry individuals |
Replication sample | NA |
Region | 7q11.23 |
Chromosome id | chr7 |
Chromosome position | 73441939 |
Reported gene | NR |
Mapped gene | BAZ1B |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 9031 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2240466-A |
SNPs | rs2240466 |
Merged | 0 |
SNP id current | 2240466 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.12 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 0.1109 |
%95 Ci | [0.07-0.15] mg/day increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | coffee consumption |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004330 |
Study accession | GCST001032 |