SNP Detail For rs2239557
1.Mapping Information
Human SNP ID rs2239557
Human chromosome chr14
Human SNP position 74085267
Pig chromosome chr7
Pig SNP position 103137170
2.Annotation Information
PubMed ID20585627
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20585627
StudyWeb-based, participant-driven studies yield novel genetic associations for common traits.
Disease/TraitCommon traits (Other)
Initial sample9,126 European ancestry individuals
Replication sampleNA
Region14q24.3
Chromosome idchr14
Chromosome position74085267
Reported geneNR
Mapped geneLIN52
Upstream gene id
Downstream gene id
SNP gene ids91750
Upstream gene distance
Downstream gene distance
SNP risk allelers2239557-?
SNPsrs2239557
Merged0
SNP id current2239557
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequencyNR
P value0.0000003
Pvalue mlog6.52287874528033
P value text(morningness)
Or beta
%95 Ci
PlatformIllumina [535076]
CNVN
Mapped traitcircadian rhythm
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004354
Study accessionGCST000706