SNP Detail For rs2239547
1.Mapping Information
Human SNP ID rs2239547
Human chromosome chr3
Human SNP position 52821213
Pig chromosome chr13
Pig SNP position 38206257
2.Annotation Information
PubMed ID21926974
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21926974
StudyGenome-wide association study identifies five new schizophrenia loci.
Disease/TraitSchizophrenia
Initial sample9,394 European ancestry cases, 12,462 European ancestry controls
Replication sample8,442 European ancestry cases, 21,397 European ancestry controls
Region3p21.1
Chromosome idchr3
Chromosome position52821213
Reported geneITIH3, ITIH4
Mapped geneITIH4
Upstream gene id
Downstream gene id
SNP gene ids3700
Upstream gene distance
Downstream gene distance
SNP risk allelers2239547-?
SNPsrs2239547
Merged0
SNP id current2239547
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000006
Pvalue mlog7.22184874961635
P value text
Or beta1.1
%95 Ci[1.06-1.14]
PlatformAffymetrix, Illumina [1252901] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST001242