Human SNP ID | rs2239547 |
---|---|
Human chromosome | chr3 |
Human SNP position | 52821213 |
Pig chromosome | chr13 |
Pig SNP position | 38206257 |
PubMed ID | 21926974 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21926974 |
Study | Genome-wide association study identifies five new schizophrenia loci. |
Disease/Trait | Schizophrenia |
Initial sample | 9,394 European ancestry cases, 12,462 European ancestry controls |
Replication sample | 8,442 European ancestry cases, 21,397 European ancestry controls |
Region | 3p21.1 |
Chromosome id | chr3 |
Chromosome position | 52821213 |
Reported gene | ITIH3, ITIH4 |
Mapped gene | ITIH4 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3700 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2239547-? |
SNPs | rs2239547 |
Merged | 0 |
SNP id current | 2239547 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.00000006 |
Pvalue mlog | 7.22184874961635 |
P value text | |
Or beta | 1.1 |
%95 Ci | [1.06-1.14] |
Platform | Affymetrix, Illumina [1252901] (imputed) |
CNV | N |
Mapped trait | schizophrenia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000692 |
Study accession | GCST001242 |