SNP Detail For rs2235649
1.Mapping Information
Human SNP ID rs2235649
Human chromosome chr16
Human SNP position 1787405
Pig chromosome chr3
Pig SNP position 41631955
2.Annotation Information
PubMed ID24816252
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24816252
StudyAn atlas of genetic influences on human blood metabolites.
Disease/TraitBlood metabolite levels
Initial sample7,824 European ancestry individuals
Replication sampleNA
Region16p13.3
Chromosome idchr16
Chromosome position1787405
Reported geneNUBP2
Mapped geneNUBP2
Upstream gene id
Downstream gene id
SNP gene ids10101
Upstream gene distance
Downstream gene distance
SNP risk allelers2235649-T
SNPsrs2235649
Merged0
SNP id current2235649
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.22
P value0.00000000002
Pvalue mlog10.698970004336
P value text(X-12556)
Or beta0.018
%95 Ci[0.012-0.024] unit decrease
PlatformAffymetrix, Illumina [2100000] (imputed)
CNVN
Mapped traitblood metabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005664
Study accessionGCST002443