Human SNP ID | rs2234978 |
---|---|
Human chromosome | chr10 |
Human SNP position | 89012072 |
Pig chromosome | chr14 |
Pig SNP position | 109935844 |
PubMed ID | 20694011 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20694011 |
Study | Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency. |
Disease/Trait | Immunoglobulin A |
Initial sample | 430 European ancestry cases, 1,090 European ancestry controls |
Replication sample | 342 European ancestry cases, 886 European ancestry controls |
Region | 10q23.31 |
Chromosome id | chr10 |
Chromosome position | 89012072 |
Reported gene | ACTA2, FAS |
Mapped gene | FAS |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 355 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2234978-A |
SNPs | rs2234978 |
Merged | 0 |
SNP id current | 2234978 |
Context | synonymous_variant |
Intergenic | 0 |
Allele frequency | 0.31 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | |
Or beta | 1.32 |
%95 Ci | [1.16-1.50] |
Platform | Illumina [2057134] (imputed) |
CNV | N |
Mapped trait | protein measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004747 |
Study accession | GCST000763 |