SNP Detail For rs2234978
1.Mapping Information
Human SNP ID rs2234978
Human chromosome chr10
Human SNP position 89012072
Pig chromosome chr14
Pig SNP position 109935844
2.Annotation Information
PubMed ID20694011
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20694011
StudyAssociation of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.
Disease/TraitImmunoglobulin A
Initial sample430 European ancestry cases, 1,090 European ancestry controls
Replication sample342 European ancestry cases, 886 European ancestry controls
Region10q23.31
Chromosome idchr10
Chromosome position89012072
Reported geneACTA2, FAS
Mapped geneFAS
Upstream gene id
Downstream gene id
SNP gene ids355
Upstream gene distance
Downstream gene distance
SNP risk allelers2234978-A
SNPsrs2234978
Merged0
SNP id current2234978
Contextsynonymous_variant
Intergenic0
Allele frequency0.31
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta1.32
%95 Ci[1.16-1.50]
PlatformIllumina [2057134] (imputed)
CNVN
Mapped traitprotein measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004747
Study accessionGCST000763