Human SNP ID | rs2233278 |
---|---|
Human chromosome | chr5 |
Human SNP position | 151087628 |
Pig chromosome | chr16 |
Pig SNP position | 78345660 |
PubMed ID | 25574825 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25574825 |
Study | Genome-wide Comparative Analysis of Atopic Dermatitis and Psoriasis Gives Insight into Opposing Genetic Mechanisms. |
Disease/Trait | Psoriasis |
Initial sample | 4,212 European ancestry cases, 8,032 European ancestry controls |
Replication sample | NA |
Region | 5q33.1 |
Chromosome id | chr5 |
Chromosome position | 151087628 |
Reported gene | ANXA6, TNIP1 |
Mapped gene | TNIP1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10318 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2233278-A |
SNPs | rs2233278 |
Merged | 0 |
SNP id current | 2233278 |
Context | 5_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000000000000000001 |
Pvalue mlog | 18 |
P value text | |
Or beta | 1.647 |
%95 Ci | [1.557-1.743] |
Platform | Affymetrix, Illumina, Perlegen [up to 5493100] (imputed) |
CNV | N |
Mapped trait | psoriasis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000676 |
Study accession | GCST002738 |
PubMed ID | 26626624 |
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26626624 |
Study | Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture. |
Disease/Trait | Psoriasis vulgaris |
Initial sample | 4,007 European ancestry cases, 4,934 European ancestry controls |
Replication sample | up to 9,075 European ancestry cases, up to European ancestry 12,726 controls |
Region | 5q33.1 |
Chromosome id | chr5 |
Chromosome position | 151087628 |
Reported gene | TNIP1 |
Mapped gene | TNIP1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10318 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2233278-C |
SNPs | rs2233278 |
Merged | 0 |
SNP id current | 2233278 |
Context | 5_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 4E-37 |
Pvalue mlog | 36.397940008672 |
P value text | |
Or beta | 1.658 |
%95 Ci | NR |
Platform | Illumina [up to 11532644] (imputed) |
CNV | N |
Mapped trait | |
Mapped trait URI | |
Study accession | GCST003268 |