SNP Detail For rs2233278
1.Mapping Information
Human SNP ID rs2233278
Human chromosome chr5
Human SNP position 151087628
Pig chromosome chr16
Pig SNP position 78345660
2.Annotation Information
PubMed ID25574825
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25574825
StudyGenome-wide Comparative Analysis of Atopic Dermatitis and Psoriasis Gives Insight into Opposing Genetic Mechanisms.
Disease/TraitPsoriasis
Initial sample4,212 European ancestry cases, 8,032 European ancestry controls
Replication sampleNA
Region5q33.1
Chromosome idchr5
Chromosome position151087628
Reported geneANXA6, TNIP1
Mapped geneTNIP1
Upstream gene id
Downstream gene id
SNP gene ids10318
Upstream gene distance
Downstream gene distance
SNP risk allelers2233278-A
SNPsrs2233278
Merged0
SNP id current2233278
Context5_prime_UTR_variant
Intergenic0
Allele frequencyNR
P value0.000000000000000001
Pvalue mlog18
P value text
Or beta1.647
%95 Ci[1.557-1.743]
PlatformAffymetrix, Illumina, Perlegen [up to 5493100] (imputed)
CNVN
Mapped traitpsoriasis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000676
Study accessionGCST002738
PubMed ID26626624
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26626624
StudyGenome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.
Disease/TraitPsoriasis vulgaris
Initial sample4,007 European ancestry cases, 4,934 European ancestry controls
Replication sampleup to 9,075 European ancestry cases, up to European ancestry 12,726 controls
Region5q33.1
Chromosome idchr5
Chromosome position151087628
Reported geneTNIP1
Mapped geneTNIP1
Upstream gene id
Downstream gene id
SNP gene ids10318
Upstream gene distance
Downstream gene distance
SNP risk allelers2233278-C
SNPsrs2233278
Merged0
SNP id current2233278
Context5_prime_UTR_variant
Intergenic0
Allele frequencyNR
P value4E-37
Pvalue mlog36.397940008672
P value text
Or beta1.658
%95 CiNR
PlatformIllumina [up to 11532644] (imputed)
CNVN
Mapped trait
Mapped trait URI
Study accessionGCST003268