SNP Detail For rs2230307
1.Mapping Information
Human SNP ID rs2230307
Human chromosome chr1
Human SNP position 99896369
Pig chromosome chr4
Pig SNP position 129779820
2.Annotation Information
PubMed ID26343869
JournalAtherosclerosis
Linkwww.ncbi.nlm.nih.gov/pubmed/26343869
StudyGenome-wide association study on progression of carotid artery intima media thickness over 10 years in a Chinese cohort.
Disease/TraitCarotid intima media thickness
Initial sample810 Chinese ancestry individuals
Replication sampleNA
Region1p21.2
Chromosome idchr1
Chromosome position99896369
Reported geneAGL
Mapped geneAGL
Upstream gene id
Downstream gene id
SNP gene ids178
Upstream gene distance
Downstream gene distance
SNP risk allelers2230307-?
SNPsrs2230307
Merged
SNP id current2230307
Contextmissense_variant
Intergenic0
Allele frequencyNR
P value0.0000004
Pvalue mlog6.39794000867203
P value text(Multiple-adjusted)
Or beta
%95 Ci
PlatformIllumina [32817]
CNVN
Mapped traitcarotid artery intima media thickness
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007117
Study accessionGCST003114