SNP Detail For rs2230061
1.Mapping Information
Human SNP ID rs2230061
Human chromosome chr1
Human SNP position 150755063
Pig chromosome chr4
Pig SNP position 107671758
2.Annotation Information
PubMed ID24064335
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24064335
StudyMeta-analysis of genome-wide association data identifies novel susceptibility loci for obesity.
Disease/TraitFat body mass
Initial sample6,433 European ancestry individuals, 709 African American individuals, 408 Hispanic individuals, 1,622 Han Chinese ancestry individuals
Replication sample4,967 European ancestry individuals, 2,740 Han Chinese ancestry individuals
Region1q21.3
Chromosome idchr1
Chromosome position150755063
Reported geneCTSS
Mapped geneCTSS
Upstream gene id
Downstream gene id
SNP gene ids1520
Upstream gene distance
Downstream gene distance
SNP risk allelers2230061-A
SNPsrs2230061
Merged0
SNP id current2230061
Contextmissense_variant
Intergenic0
Allele frequencyNR
P value0.00000004
Pvalue mlog7.39794000867203
P value text(Adjusted by Lean body mass)
Or beta0.06
%95 Ci[0.040-0.080] unit decrease
PlatformAffymetrix, Illumina [4325550] (imputed)
CNVN
Mapped traitfat body mass
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005409
Study accessionGCST002226