Human SNP ID | rs2230061 |
---|---|
Human chromosome | chr1 |
Human SNP position | 150755063 |
Pig chromosome | chr4 |
Pig SNP position | 107671758 |
PubMed ID | 24064335 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24064335 |
Study | Meta-analysis of genome-wide association data identifies novel susceptibility loci for obesity. |
Disease/Trait | Fat body mass |
Initial sample | 6,433 European ancestry individuals, 709 African American individuals, 408 Hispanic individuals, 1,622 Han Chinese ancestry individuals |
Replication sample | 4,967 European ancestry individuals, 2,740 Han Chinese ancestry individuals |
Region | 1q21.3 |
Chromosome id | chr1 |
Chromosome position | 150755063 |
Reported gene | CTSS |
Mapped gene | CTSS |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 1520 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2230061-A |
SNPs | rs2230061 |
Merged | 0 |
SNP id current | 2230061 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.00000004 |
Pvalue mlog | 7.39794000867203 |
P value text | (Adjusted by Lean body mass) |
Or beta | 0.06 |
%95 Ci | [0.040-0.080] unit decrease |
Platform | Affymetrix, Illumina [4325550] (imputed) |
CNV | N |
Mapped trait | fat body mass |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005409 |
Study accession | GCST002226 |