Human SNP ID | rs2229882 |
---|---|
Human chromosome | chr5 |
Human SNP position | 56872885 |
Pig chromosome | chr16 |
Pig SNP position | 38192945 |
PubMed ID | 24493630 |
---|---|
Journal | Cancer Epidemiol Biomarkers Prev |
Link | www.ncbi.nlm.nih.gov/pubmed/24493630 |
Study | A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age. |
Disease/Trait | Breast cancer (early onset) |
Initial sample | 3,523 European ancestry young female cases, 2,702 European ancestry young female controls |
Replication sample | 3,470 European ancestry young female cases, 5,475 European ancestry young female controls |
Region | 5q11.2 |
Chromosome id | chr5 |
Chromosome position | 56872885 |
Reported gene | MAP3K1 |
Mapped gene | MAP3K1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 4214 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2229882-? |
SNPs | rs2229882 |
Merged | 0 |
SNP id current | 2229882 |
Context | synonymous_variant |
Intergenic | 0 |
Allele frequency | 0.06 |
P value | 0.00000000000001 |
Pvalue mlog | 14 |
P value text | |
Or beta | 1.45 |
%95 Ci | [1.32-1.60] |
Platform | Illumina [1265548] (imputed) |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST002346 |