SNP Detail For rs2229882
1.Mapping Information
Human SNP ID rs2229882
Human chromosome chr5
Human SNP position 56872885
Pig chromosome chr16
Pig SNP position 38192945
2.Annotation Information
PubMed ID24493630
JournalCancer Epidemiol Biomarkers Prev
Linkwww.ncbi.nlm.nih.gov/pubmed/24493630
StudyA genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.
Disease/TraitBreast cancer (early onset)
Initial sample3,523 European ancestry young female cases, 2,702 European ancestry young female controls
Replication sample3,470 European ancestry young female cases, 5,475 European ancestry young female controls
Region5q11.2
Chromosome idchr5
Chromosome position56872885
Reported geneMAP3K1
Mapped geneMAP3K1
Upstream gene id
Downstream gene id
SNP gene ids4214
Upstream gene distance
Downstream gene distance
SNP risk allelers2229882-?
SNPsrs2229882
Merged0
SNP id current2229882
Contextsynonymous_variant
Intergenic0
Allele frequency0.06
P value0.00000000000001
Pvalue mlog14
P value text
Or beta1.45
%95 Ci[1.32-1.60]
PlatformIllumina [1265548] (imputed)
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST002346