SNP Detail For rs2229116
1.Mapping Information
Human SNP ID rs2229116
Human chromosome chr15
Human SNP position 33613209
Pig chromosome chr7
Pig SNP position 83277174
2.Annotation Information
PubMed ID20009918
JournalAIDS
Linkwww.ncbi.nlm.nih.gov/pubmed/20009918
StudyA genome-wide association study of carotid atherosclerosis in HIV-infected men.
Disease/TraitCarotid atherosclerosis in HIV infection
Initial sample177 European ancestry individuals
Replication sampleNA
Region15q14
Chromosome idchr15
Chromosome position33613209
Reported geneRYR3
Mapped geneRYR3
Upstream gene id
Downstream gene id
SNP gene ids6263
Upstream gene distance
Downstream gene distance
SNP risk allelers2229116-G
SNPsrs2229116
Merged0
SNP id current2229116
Contextmissense_variant
Intergenic0
Allele frequency0.18
P value0.00000003
Pvalue mlog7.52287874528033
P value text(common cIMT)
Or beta
%95 Ci
PlatformIllumina [311194]
CNVN
Mapped traitHIV-1 infection, common carotid intimal medial thickness
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0004860
Study accessionGCST000555