Human SNP ID | rs2229116 |
---|---|
Human chromosome | chr15 |
Human SNP position | 33613209 |
Pig chromosome | chr7 |
Pig SNP position | 83277174 |
PubMed ID | 20009918 |
---|---|
Journal | AIDS |
Link | www.ncbi.nlm.nih.gov/pubmed/20009918 |
Study | A genome-wide association study of carotid atherosclerosis in HIV-infected men. |
Disease/Trait | Carotid atherosclerosis in HIV infection |
Initial sample | 177 European ancestry individuals |
Replication sample | NA |
Region | 15q14 |
Chromosome id | chr15 |
Chromosome position | 33613209 |
Reported gene | RYR3 |
Mapped gene | RYR3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6263 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2229116-G |
SNPs | rs2229116 |
Merged | 0 |
SNP id current | 2229116 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.18 |
P value | 0.00000003 |
Pvalue mlog | 7.52287874528033 |
P value text | (common cIMT) |
Or beta | |
%95 Ci | |
Platform | Illumina [311194] |
CNV | N |
Mapped trait | HIV-1 infection, common carotid intimal medial thickness |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0004860 |
Study accession | GCST000555 |