Human SNP ID | rs2228671 |
---|---|
Human chromosome | chr19 |
Human SNP position | 11100236 |
Pig chromosome | chr2 |
Pig SNP position | 70196060 |
PubMed ID | 19060911 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19060911 |
Study | Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts. |
Disease/Trait | LDL cholesterol |
Initial sample | 17,083 European ancestry individuals, 714 Orcadian individuals |
Replication sample | NA |
Region | 19p13.2 |
Chromosome id | chr19 |
Chromosome position | 11100236 |
Reported gene | LDLR |
Mapped gene | LDLR |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3949 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2228671-G |
SNPs | rs2228671 |
Merged | 0 |
SNP id current | 2228671 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.88 |
P value | 0.00000000000004 |
Pvalue mlog | 13.397940008672 |
P value text | |
Or beta | 0.14 |
%95 Ci | [NR] s.d. increase |
Platform | Affymetrix, Illumina [up to 600000] |
CNV | N |
Mapped trait | low density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004611 |
Study accession | GCST000282 |
PubMed ID | 19060911 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19060911 |
Study | Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts. |
Disease/Trait | Cholesterol, total |
Initial sample | 21,848 European ancestry individuals, 714 Orcadian individuals |
Replication sample | NA |
Region | 19p13.2 |
Chromosome id | chr19 |
Chromosome position | 11100236 |
Reported gene | LDLR |
Mapped gene | LDLR |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3949 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2228671-G |
SNPs | rs2228671 |
Merged | 0 |
SNP id current | 2228671 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.88 |
P value | 9E-24 |
Pvalue mlog | 23.0457574905606 |
P value text | |
Or beta | 0.16 |
%95 Ci | [NR] s.d. increase |
Platform | Affymetrix, Illumina [up to 600000] |
CNV | N |
Mapped trait | total cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004574 |
Study accession | GCST000285 |