Human SNP ID | rs2228467 |
---|---|
Human chromosome | chr3 |
Human SNP position | 42864624 |
Pig chromosome | chr13 |
Pig SNP position | 28991518 |
PubMed ID | 23314186 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23314186 |
Study | Genetic variation associated with circulating monocyte count in the eMERGE Network. |
Disease/Trait | Monocyte count |
Initial sample | 9,849 European ancestry individuals, 894 African ancestry individuals, 271 individuals |
Replication sample | NA |
Region | 3p22.1 |
Chromosome id | chr3 |
Chromosome position | 42864624 |
Reported gene | CCBP2 |
Mapped gene | ACKR2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 1238 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2228467-G |
SNPs | rs2228467 |
Merged | 0 |
SNP id current | 2228467 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.06 |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | |
Or beta | 0.3 |
%95 Ci | unit increase |
Platform | Illumina [NR] |
CNV | N |
Mapped trait | monocyte count |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005091 |
Study accession | GCST001887 |
PubMed ID | 25340798 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25340798 |
Study | Genome-Wide Association Study of CSF Levels of 59 Alzheimer__s Disease Candidate Proteins: Significant Associations with Proteins Involved in Amyloid Processing and Inflammation. |
Disease/Trait | Cerebrospinal fluid levels of Alzheimer__s disease-related proteins |
Initial sample | 574 individuals |
Replication sample | NA |
Region | 3p22.1 |
Chromosome id | chr3 |
Chromosome position | 42864624 |
Reported gene | CCBP2 |
Mapped gene | ACKR2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 1238 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2228467-G |
SNPs | rs2228467 |
Merged | 0 |
SNP id current | 2228467 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000000000000000004 |
Pvalue mlog | 17.397940008672 |
P value text | (Monocyte chemotactic protein 1) |
Or beta | |
%95 Ci | |
Platform | Illumina [5815690] (imputed) |
CNV | N |
Mapped trait | Alzheimers disease, Alzheimer__s disease biomarker measurement, CCL2 measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000249, http://www.ebi.ac.uk/efo/EFO_0006514, http://www.ebi.ac.uk/efo/EFO_0004749 |
Study accession | GCST002665 |