SNP Detail For rs2227564
1.Mapping Information
Human SNP ID rs2227564
Human chromosome chr10
Human SNP position 73913343
Pig chromosome chr14
Pig SNP position 82757648
2.Annotation Information
PubMed ID23128233
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/23128233
StudyHost-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
Disease/TraitInflammatory bowel disease
Initial sample12,924 European ancestry cases, 21,442 European ancestry controls
Replication sample25,683 European ancestry cases, 17,015 European ancestry controls
Region10q22.2
Chromosome idchr10
Chromosome position73913343
Reported geneintergenic
Mapped genePLAU, C10orf55
Upstream gene id
Downstream gene id
SNP gene ids5328, 414236
Upstream gene distance
Downstream gene distance
SNP risk allelers2227564-C
SNPsrs2227564
Merged0
SNP id current2227564
Contextmissense_variant
Intergenic0
Allele frequency0.77
P value0.0000000007
Pvalue mlog9.15490195998574
P value text
Or beta1.082
%95 Ci[1.048-1.118]
PlatformAffymetrix, Illumina [1230000] (imputed)
CNVN
Mapped traitinflammatory bowel disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST001725