Human SNP ID | rs2227564 |
---|---|
Human chromosome | chr10 |
Human SNP position | 73913343 |
Pig chromosome | chr14 |
Pig SNP position | 82757648 |
PubMed ID | 23128233 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/23128233 |
Study | Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. |
Disease/Trait | Inflammatory bowel disease |
Initial sample | 12,924 European ancestry cases, 21,442 European ancestry controls |
Replication sample | 25,683 European ancestry cases, 17,015 European ancestry controls |
Region | 10q22.2 |
Chromosome id | chr10 |
Chromosome position | 73913343 |
Reported gene | intergenic |
Mapped gene | PLAU, C10orf55 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5328, 414236 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2227564-C |
SNPs | rs2227564 |
Merged | 0 |
SNP id current | 2227564 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.77 |
P value | 0.0000000007 |
Pvalue mlog | 9.15490195998574 |
P value text | |
Or beta | 1.082 |
%95 Ci | [1.048-1.118] |
Platform | Affymetrix, Illumina [1230000] (imputed) |
CNV | N |
Mapped trait | inflammatory bowel disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003767 |
Study accession | GCST001725 |