SNP Detail For rs2227551
1.Mapping Information
Human SNP ID rs2227551
Human chromosome chr10
Human SNP position 73909432
Pig chromosome chr14
Pig SNP position 82753900
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitCrohn__s disease
Initial sample5,956 European ancestry cases, 14,927 European ancestry controls
Replication sample14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region10q22.2
Chromosome idchr10
Chromosome position73909432
Reported geneNR
Mapped genePLAU
Upstream gene id
Downstream gene id
SNP gene ids5328
Upstream gene distance
Downstream gene distance
SNP risk allelers2227551-C
SNPsrs2227551
Merged
SNP id current2227551
Contextintron_variant
Intergenic0
Allele frequency0.73
P value0.0000000000005
Pvalue mlog12.3010299956639
P value text(EA)
Or beta1.1045585
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST003044