SNP Detail For rs2222656
1.Mapping Information
Human SNP ID rs2222656
Human chromosome chr15
Human SNP position 52480826
Pig chromosome chr1
Pig SNP position 132289343
2.Annotation Information
PubMed ID23934736
JournalGenet Epidemiol
Linkwww.ncbi.nlm.nih.gov/pubmed/23934736
StudyGenome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.
Disease/TraitMetabolite levels (Pyroglutamine)
Initial sample1,260 African American individuals
Replication sampleNA
Region15q21.2
Chromosome idchr15
Chromosome position52480826
Reported geneMYO5A
Mapped geneMYO5A
Upstream gene id
Downstream gene id
SNP gene ids4644
Upstream gene distance
Downstream gene distance
SNP risk allelers2222656-A
SNPsrs2222656
Merged0
SNP id current2222656
Contextintron_variant
Intergenic0
Allele frequency
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.12
%95 Ci[0.07-0.17] unit decrease
PlatformAffymetrix [~ 2500000] (imputed)
CNVN
Mapped traitpyroglutamine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005408
Study accessionGCST002118