Human SNP ID | rs2206277 |
---|---|
Human chromosome | chr6 |
Human SNP position | 50830813 |
Pig chromosome | JH118430-1 |
Pig SNP position | 232707 |
PubMed ID | 21386085 |
---|---|
Journal | Diabetes |
Link | www.ncbi.nlm.nih.gov/pubmed/21386085 |
Study | A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium. |
Disease/Trait | Metabolic syndrome (bivariate traits) |
Initial sample | 22,161 European ancestry individuals |
Replication sample | NA |
Region | 6p12.3 |
Chromosome id | chr6 |
Chromosome position | 50830813 |
Reported gene | TFAP2B |
Mapped gene | TFAP2B |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 7021 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2206277-A |
SNPs | rs2206277 |
Merged | 0 |
SNP id current | 2206277 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | (WC-GLUC) |
Or beta | 0.17 |
%95 Ci | [0.11-0.23] unit increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | metabolic syndrome |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000195 |
Study accession | GCST001007 |
PubMed ID | 23563607 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23563607 |
Study | Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture. |
Disease/Trait | Obesity |
Initial sample | 93,015 European ancestry overweight individuals, 32,858 European ancestry class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls |
Replication sample | 65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls |
Region | 6p12.3 |
Chromosome id | chr6 |
Chromosome position | 50830813 |
Reported gene | TFAP2B |
Mapped gene | TFAP2B |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 7021 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2206277-T |
SNPs | rs2206277 |
Merged | 0 |
SNP id current | 2206277 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.18 |
P value | 0.0000000000000007 |
Pvalue mlog | 15.1549019599857 |
P value text | (Overweight) |
Or beta | 1.07 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [~ 2800000] (imputed) |
CNV | N |
Mapped trait | obesity |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001073 |
Study accession | GCST001953 |
PubMed ID | 23563607 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23563607 |
Study | Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture. |
Disease/Trait | Obesity |
Initial sample | 93,015 European ancestry overweight individuals, 32,858 European ancestry class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls |
Replication sample | 65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls |
Region | 6p12.3 |
Chromosome id | chr6 |
Chromosome position | 50830813 |
Reported gene | TFAP2B |
Mapped gene | TFAP2B |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 7021 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2206277-T |
SNPs | rs2206277 |
Merged | 0 |
SNP id current | 2206277 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.18 |
P value | 5E-22 |
Pvalue mlog | 21.3010299956639 |
P value text | (Obesity class I) |
Or beta | 1.12 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [~ 2800000] (imputed) |
CNV | N |
Mapped trait | obesity |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001073 |
Study accession | GCST001953 |